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Molecular Instruments hybridization buffer
Hybridization Buffer, supplied by Molecular Instruments, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/hybridization+buffer/buffer+hybridization+probe/us12655444-546-78-70
Average 86 stars, based on 1 article reviews
hybridization buffer - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Hybridization:

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. After rinsing in SSCT, sections were pre-hybridized in Hybridization Buffer (Molecular Instruments) for 1.5h at 37◦C and then incubated overnight with probes at 12 nM concentration in Hybridization Buffer at 37◦C. .. The following day, samples were washed in Wash Buffer (Molecular Instruments) and then in SSCT, then incubated in Amplification Buffer (Molecular Instruments) for 30 min.

Article Title: Artificial expression constructs for selectively modulating gene expression in non-neuronal brain cells
Article Snippet: For sectioning, hemispheres were embedded in 1% low-melt agarose in PBS and cut 50 μm sagittal sections on a Leica VT1000S vibratome in cold PBS buffer. .. Sections were post-fixed in 4% PFA in PBS for 2 hours and then rinsed in PBS at room temperature, then dehydrated with 70% ethanol at 4° C. Afterwards sections could be stored for up to a month in 4° C. For staining, sections were cleared with 8% SDS in PBS for 2 hours at room temperature then washed three times in 2×SSC for 1 hour each, then with Hybridization Buffer (Molecular Instruments) in a new well before applying Hybridization Buffer containing HCR Probes and hybridized overnight at 37° C. The next day samples were washed with 30% Probe Wash Buffer for 1 hour at 37° C., then rinsed with 2×SSC. ..

Article Title: Retinoic Acid Informs the Positional Identity of Frontonasal Neural Crest Cells Through Alx Family of Transcription Factors
Article Snippet: .. After pre- hybridizing in 500 μL hybridization buffer (HCR Buffers, Molecular Instruments, USA) for 30 min at 37°C, the embryos were incubated overnight at 37°C in hybridization solution containing probes targeting genes (4 pmol in 500 μL hybridization buffer). .. After hybridization, samples were washed four times using HCR washing buffer (HCR Buffers, Molecular Instruments, USA) at 37°C, followed by two washes in 5xSSCT at RT.

Article Title: Engulfment by brain macrophages in a short-lived vertebrate
Article Snippet: .. After the overnight incubation with probes sets diluted in hybridization buffer, HCR wash buffer (Molecular Instruments, “HCR Probe Wash Buffer,” for tissue sections; 250 μL per slide; preheated to 37°C) was applied to was applied to the slides, which were incubated at 37°C for two washes of 30 minutes each with a coverslip on top. ..

Article Title: Elevated phagocytic capacity directs innate spinal cord repair.
Article Snippet: .. For blocking, sections were incubated in prewarmed hybridization buffer (Molecular Instruments) for 1 h at 37◦C. ..

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. Probes were added to the Hybridization Buffer (Molecular Instruments) to a concentration of 12 nM and incubated for three days at 37◦C. .. Samples were washed in Wash Buffer (Molecular Instruments) and SSCT (5xSSC + 0.1% TritonX) before incubation with 60 pM snap-cooled HCR hairpins (Molecular Instruments) in Amplification Buffer (Molecular Instruments) for 3 days at 4◦C.

Article Title: An antagonistically pleiotropic gene regulates vertebrate growth, maturity, and lifespan.
Article Snippet: Part of the fin was dissected, finely minced with scissors, and digested with 0.2% Collagenase Type P (Merck Millipore) and 0.12% Dispase II (Sigma Aldrich) in Leibovitz’s L-15 Medium (Gibco) for 30min atRT.Cellswerefilteredusing aFalcon40 μmfilter, centrifuged at 0.4 g for 10min, resuspended in L15 with 10% FBS, and injected dorsally in rag2Δ250/Δ250 and WT recipients. .. Slides were pre-hybridized in the hybridization buffer provided by the manufacturer (Molecular Instruments) and then hybridizedwith the indicatedprobe (20 nM, in hybridization buffer) at 37 °C overnight. ..

Incubation:

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. After rinsing in SSCT, sections were pre-hybridized in Hybridization Buffer (Molecular Instruments) for 1.5h at 37◦C and then incubated overnight with probes at 12 nM concentration in Hybridization Buffer at 37◦C. .. The following day, samples were washed in Wash Buffer (Molecular Instruments) and then in SSCT, then incubated in Amplification Buffer (Molecular Instruments) for 30 min.

Article Title: Retinoic Acid Informs the Positional Identity of Frontonasal Neural Crest Cells Through Alx Family of Transcription Factors
Article Snippet: .. After pre- hybridizing in 500 μL hybridization buffer (HCR Buffers, Molecular Instruments, USA) for 30 min at 37°C, the embryos were incubated overnight at 37°C in hybridization solution containing probes targeting genes (4 pmol in 500 μL hybridization buffer). .. After hybridization, samples were washed four times using HCR washing buffer (HCR Buffers, Molecular Instruments, USA) at 37°C, followed by two washes in 5xSSCT at RT.

Article Title: Engulfment by brain macrophages in a short-lived vertebrate
Article Snippet: .. After the overnight incubation with probes sets diluted in hybridization buffer, HCR wash buffer (Molecular Instruments, “HCR Probe Wash Buffer,” for tissue sections; 250 μL per slide; preheated to 37°C) was applied to was applied to the slides, which were incubated at 37°C for two washes of 30 minutes each with a coverslip on top. ..

Article Title: Elevated phagocytic capacity directs innate spinal cord repair.
Article Snippet: .. For blocking, sections were incubated in prewarmed hybridization buffer (Molecular Instruments) for 1 h at 37◦C. ..

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. Probes were added to the Hybridization Buffer (Molecular Instruments) to a concentration of 12 nM and incubated for three days at 37◦C. .. Samples were washed in Wash Buffer (Molecular Instruments) and SSCT (5xSSC + 0.1% TritonX) before incubation with 60 pM snap-cooled HCR hairpins (Molecular Instruments) in Amplification Buffer (Molecular Instruments) for 3 days at 4◦C.

Concentration Assay:

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. After rinsing in SSCT, sections were pre-hybridized in Hybridization Buffer (Molecular Instruments) for 1.5h at 37◦C and then incubated overnight with probes at 12 nM concentration in Hybridization Buffer at 37◦C. .. The following day, samples were washed in Wash Buffer (Molecular Instruments) and then in SSCT, then incubated in Amplification Buffer (Molecular Instruments) for 30 min.

Article Title: Evolutionary origins and transcriptomic innovations of vertebrate Cajal-Retzius cells.
Article Snippet: .. Probes were added to the Hybridization Buffer (Molecular Instruments) to a concentration of 12 nM and incubated for three days at 37◦C. .. Samples were washed in Wash Buffer (Molecular Instruments) and SSCT (5xSSC + 0.1% TritonX) before incubation with 60 pM snap-cooled HCR hairpins (Molecular Instruments) in Amplification Buffer (Molecular Instruments) for 3 days at 4◦C.

Staining:

Article Title: Artificial expression constructs for selectively modulating gene expression in non-neuronal brain cells
Article Snippet: For sectioning, hemispheres were embedded in 1% low-melt agarose in PBS and cut 50 μm sagittal sections on a Leica VT1000S vibratome in cold PBS buffer. .. Sections were post-fixed in 4% PFA in PBS for 2 hours and then rinsed in PBS at room temperature, then dehydrated with 70% ethanol at 4° C. Afterwards sections could be stored for up to a month in 4° C. For staining, sections were cleared with 8% SDS in PBS for 2 hours at room temperature then washed three times in 2×SSC for 1 hour each, then with Hybridization Buffer (Molecular Instruments) in a new well before applying Hybridization Buffer containing HCR Probes and hybridized overnight at 37° C. The next day samples were washed with 30% Probe Wash Buffer for 1 hour at 37° C., then rinsed with 2×SSC. ..

Blocking Assay:

Article Title: Elevated phagocytic capacity directs innate spinal cord repair.
Article Snippet: .. For blocking, sections were incubated in prewarmed hybridization buffer (Molecular Instruments) for 1 h at 37◦C. ..

other:

Article Title: Methods, culture medias and devices for generating embryos in vitro from stem cells
Article Snippet: Samples were transferred to a cryomold, carefully positioned in OCT compound solution (Agar Scientific), and frozen in dry ice ethanol.



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(A, B) The C5-hFc-siSOD1 conjugate was dosed in WT mice as a single IV or SC bolus at 1.5 mg/kg (A) or 0.14 to 9 mg/kg siRNA equivalent dose (B). Target knockdown was measured 14 days after administration, using RT-qPCR on total RNA extracts from indicated regions of the CNS. The results are expressed as a ratio to mRNA levels measured in PBS-treated animals after normalization to RpL13 and RpL30 reference genes. (A) Box plots: extends from the 25th to 75th percentiles with center line plotted at the median. Whiskers indicate the smallest and the largest experimental values (n = 8-16 animals per group from 3 independent experiments). (B) Dose-response curves in each CNS region, where experimental results are expressed as means ± SEM, and estimated ED 50 values. (C) Mice were administered with either multi-IV (Q2Dx3) at 1.5 mg/kg or single SC at 4.5 mg/kg siRNA equivalent dose of the C5-hFc-siSOD1 conjugate. Shown are in situ <t>hybridization</t> micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections), and corresponding Sod1 mRNA (lower panels, RNAScope®), 14 days after the last IV or single SC (representative animal from n=4 mice per group). (D) Magnifications and neuron-specific co-staining, using a Map2 mRNA-specific probe, in indicated regions of the brain.
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Molecular Instruments probe hybridization buffer
(A, B) The C5-hFc-siSOD1 conjugate was dosed in WT mice as a single IV or SC bolus at 1.5 mg/kg (A) or 0.14 to 9 mg/kg siRNA equivalent dose (B). Target knockdown was measured 14 days after administration, using RT-qPCR on total RNA extracts from indicated regions of the CNS. The results are expressed as a ratio to mRNA levels measured in PBS-treated animals after normalization to RpL13 and RpL30 reference genes. (A) Box plots: extends from the 25th to 75th percentiles with center line plotted at the median. Whiskers indicate the smallest and the largest experimental values (n = 8-16 animals per group from 3 independent experiments). (B) Dose-response curves in each CNS region, where experimental results are expressed as means ± SEM, and estimated ED 50 values. (C) Mice were administered with either multi-IV (Q2Dx3) at 1.5 mg/kg or single SC at 4.5 mg/kg siRNA equivalent dose of the C5-hFc-siSOD1 conjugate. Shown are in situ <t>hybridization</t> micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections), and corresponding Sod1 mRNA (lower panels, RNAScope®), 14 days after the last IV or single SC (representative animal from n=4 mice per group). (D) Magnifications and neuron-specific co-staining, using a Map2 mRNA-specific probe, in indicated regions of the brain.
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(A, B) The C5-hFc-siSOD1 conjugate was dosed in WT mice as a single IV or SC bolus at 1.5 mg/kg (A) or 0.14 to 9 mg/kg siRNA equivalent dose (B). Target knockdown was measured 14 days after administration, using RT-qPCR on total RNA extracts from indicated regions of the CNS. The results are expressed as a ratio to mRNA levels measured in PBS-treated animals after normalization to RpL13 and RpL30 reference genes. (A) Box plots: extends from the 25th to 75th percentiles with center line plotted at the median. Whiskers indicate the smallest and the largest experimental values (n = 8-16 animals per group from 3 independent experiments). (B) Dose-response curves in each CNS region, where experimental results are expressed as means ± SEM, and estimated ED 50 values. (C) Mice were administered with either multi-IV (Q2Dx3) at 1.5 mg/kg or single SC at 4.5 mg/kg siRNA equivalent dose of the C5-hFc-siSOD1 conjugate. Shown are in situ <t>hybridization</t> micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections), and corresponding Sod1 mRNA (lower panels, RNAScope®), 14 days after the last IV or single SC (representative animal from n=4 mice per group). (D) Magnifications and neuron-specific co-staining, using a Map2 mRNA-specific probe, in indicated regions of the brain.
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(A, B) The C5-hFc-siSOD1 conjugate was dosed in WT mice as a single IV or SC bolus at 1.5 mg/kg (A) or 0.14 to 9 mg/kg siRNA equivalent dose (B). Target knockdown was measured 14 days after administration, using RT-qPCR on total RNA extracts from indicated regions of the CNS. The results are expressed as a ratio to mRNA levels measured in PBS-treated animals after normalization to RpL13 and RpL30 reference genes. (A) Box plots: extends from the 25th to 75th percentiles with center line plotted at the median. Whiskers indicate the smallest and the largest experimental values (n = 8-16 animals per group from 3 independent experiments). (B) Dose-response curves in each CNS region, where experimental results are expressed as means ± SEM, and estimated ED 50 values. (C) Mice were administered with either multi-IV (Q2Dx3) at 1.5 mg/kg or single SC at 4.5 mg/kg siRNA equivalent dose of the C5-hFc-siSOD1 conjugate. Shown are in situ hybridization micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections), and corresponding Sod1 mRNA (lower panels, RNAScope®), 14 days after the last IV or single SC (representative animal from n=4 mice per group). (D) Magnifications and neuron-specific co-staining, using a Map2 mRNA-specific probe, in indicated regions of the brain.

Journal: bioRxiv

Article Title: Harnessing TfR1 for Cross-Species Systemic Delivery of siRNAs to Deep Brain Regions Using Single-Domain Antibodies

doi: 10.64898/2026.05.20.726486

Figure Lengend Snippet: (A, B) The C5-hFc-siSOD1 conjugate was dosed in WT mice as a single IV or SC bolus at 1.5 mg/kg (A) or 0.14 to 9 mg/kg siRNA equivalent dose (B). Target knockdown was measured 14 days after administration, using RT-qPCR on total RNA extracts from indicated regions of the CNS. The results are expressed as a ratio to mRNA levels measured in PBS-treated animals after normalization to RpL13 and RpL30 reference genes. (A) Box plots: extends from the 25th to 75th percentiles with center line plotted at the median. Whiskers indicate the smallest and the largest experimental values (n = 8-16 animals per group from 3 independent experiments). (B) Dose-response curves in each CNS region, where experimental results are expressed as means ± SEM, and estimated ED 50 values. (C) Mice were administered with either multi-IV (Q2Dx3) at 1.5 mg/kg or single SC at 4.5 mg/kg siRNA equivalent dose of the C5-hFc-siSOD1 conjugate. Shown are in situ hybridization micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections), and corresponding Sod1 mRNA (lower panels, RNAScope®), 14 days after the last IV or single SC (representative animal from n=4 mice per group). (D) Magnifications and neuron-specific co-staining, using a Map2 mRNA-specific probe, in indicated regions of the brain.

Article Snippet: For knock-down analysis on tissue sections using in situ hybridization (RNAScope, ACD), left cerebral hemisphere half-slices were cut into one ventral and one dorsal parts and immediately immersed in 10% neutral buffer formalin (NBF) fixative solution for approximately 48h at RT.

Techniques: Knockdown, Quantitative RT-PCR, In Situ Hybridization, RNAscope, Staining

(A-B) In situ hybridization micrographs showing siSOD1 AS distribution (miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections) (A), 14 days after multi-IV bolus (Q2D x3) of the non-binding C5neg- or the TfR1-binding B8V32-hFc-siSOD1 conjugates, at 1.5 mg/kg siRNA. (B) In situ hybridization micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) and corresponding Sod1 mRNA (lower panels, RNAScope®) in retina layers of the same animals (representative animal from n=4 mice per group). Retina layers: GCL, Ganglion Cell Layer; IPL, Inner Plexiform Layer; INL, Inner Nuclear Layer; OPL, Outer Plexiform Layer; ONL, Outer Nuclear Layer; IS, Inner Segments; OS, Outer Segments; RPE, Retinal Pigment Epithelium; Chor, Choroid.

Journal: bioRxiv

Article Title: Harnessing TfR1 for Cross-Species Systemic Delivery of siRNAs to Deep Brain Regions Using Single-Domain Antibodies

doi: 10.64898/2026.05.20.726486

Figure Lengend Snippet: (A-B) In situ hybridization micrographs showing siSOD1 AS distribution (miRNAScope®) throughout the brain (sagittal sections) and spinal cord (cross-sections) (A), 14 days after multi-IV bolus (Q2D x3) of the non-binding C5neg- or the TfR1-binding B8V32-hFc-siSOD1 conjugates, at 1.5 mg/kg siRNA. (B) In situ hybridization micrographs showing siSOD1 AS distribution (top panels, miRNAScope®) and corresponding Sod1 mRNA (lower panels, RNAScope®) in retina layers of the same animals (representative animal from n=4 mice per group). Retina layers: GCL, Ganglion Cell Layer; IPL, Inner Plexiform Layer; INL, Inner Nuclear Layer; OPL, Outer Plexiform Layer; ONL, Outer Nuclear Layer; IS, Inner Segments; OS, Outer Segments; RPE, Retinal Pigment Epithelium; Chor, Choroid.

Article Snippet: For knock-down analysis on tissue sections using in situ hybridization (RNAScope, ACD), left cerebral hemisphere half-slices were cut into one ventral and one dorsal parts and immediately immersed in 10% neutral buffer formalin (NBF) fixative solution for approximately 48h at RT.

Techniques: In Situ Hybridization, Binding Assay, RNAscope

Cynomolgus monkeys were dosed by 30-min IV infusion three times at 7 days intervals with the B8V32-hFc-siHPRT conjugate, at the same dose previously evaluated in hTfR-KI mice of 1.5 mg/kg siRNA equivalent dose. Plasma samples were collected at indicated timepoints for PK analysis (A). Tissues were recovered at 14 days after last injection to assess target knockdown using RT-qPCR (B) and in situ hybridization in the brain using RNAScope® on one coronal section through the putamen (top panels: approximately -1 to -3 mm from the anterior commissure, based on Calabrese et al. 2015) and one through the hippocampus (lower panels: approximately -11 to -13 mm from the anterior commissure; star indicates an artefact) (C). (D) Neuroinflammation was assessed on brain tissue samples by measurement of mRNA levels of IbA1, GFAP and C3 as markers of microglial reactivity, astrocyte reactivity and complement activation, respectively.

Journal: bioRxiv

Article Title: Harnessing TfR1 for Cross-Species Systemic Delivery of siRNAs to Deep Brain Regions Using Single-Domain Antibodies

doi: 10.64898/2026.05.20.726486

Figure Lengend Snippet: Cynomolgus monkeys were dosed by 30-min IV infusion three times at 7 days intervals with the B8V32-hFc-siHPRT conjugate, at the same dose previously evaluated in hTfR-KI mice of 1.5 mg/kg siRNA equivalent dose. Plasma samples were collected at indicated timepoints for PK analysis (A). Tissues were recovered at 14 days after last injection to assess target knockdown using RT-qPCR (B) and in situ hybridization in the brain using RNAScope® on one coronal section through the putamen (top panels: approximately -1 to -3 mm from the anterior commissure, based on Calabrese et al. 2015) and one through the hippocampus (lower panels: approximately -11 to -13 mm from the anterior commissure; star indicates an artefact) (C). (D) Neuroinflammation was assessed on brain tissue samples by measurement of mRNA levels of IbA1, GFAP and C3 as markers of microglial reactivity, astrocyte reactivity and complement activation, respectively.

Article Snippet: For knock-down analysis on tissue sections using in situ hybridization (RNAScope, ACD), left cerebral hemisphere half-slices were cut into one ventral and one dorsal parts and immediately immersed in 10% neutral buffer formalin (NBF) fixative solution for approximately 48h at RT.

Techniques: Clinical Proteomics, Injection, Knockdown, Quantitative RT-PCR, In Situ Hybridization, RNAscope, Activation Assay